T-BAS: Tree-Based Alignment Selector toolkit

This is the start page for T-BAS with links to portals representing different taxonomic groups.

Welcome to T-BAS


ToolDescription
T-BAS v1.0 (Pezizomycotina; Ascomycota)

(updated Jan 2017)

Visualize phylogenetic relationships and metadata for Pezizomycotina, download alignments for six loci, perform placement of unknowns using either BLAST or phylogeny-based approaches in RAxML.
T-BAS v1.0 (Fungal Tree of Life; James et al 2006) Visualize phylogenetic relationships and metadata for Ascomycota, Basidiomycota, Zygomycota, Glomeromycota, and Chytridiomycota, download alignments for six loci, perform placement of unknowns using phylogeny-based approaches in RAxML.
T-BAS v1.0 (Saccharomycotina; Ascomycota) Visualize phylogenetic relationships and metadata for Saccharomycotina, download alignments, perform placement of unknowns using either BLAST or phylogeny-based approaches in RAxML.
T-BAS v1.0 (Lecanoromycetes; Ascomycota) Visualize phylogenetic relationships and metadata for Lecanoromycetes, download alignments, perform placement of unknowns using either BLAST or phylogeny-based approaches in RAxML.
T-BAS v1.0 (Xylariaceae; Ascomycota) Visualize phylogenetic relationships and metadata for Xylariaceae, download alignments, perform placement of unknowns using phylogeny-based approaches in RAxML (restricted access).
T-BAS v1.0 (Sordariomycetes) Visualize phylogenetic relationships and metadata for Sordariomycetes, download alignments for six loci, perform placement of unknowns using phylogeny-based approaches in RAxML (restricted access).
T-BAS v1.0 (Bacteria) Visualize phylogenetic relationships and metadata for Bacteria, download alignments for SSU rRNA, perform placement of unknowns using phylogeny-based approaches in RAxML (restricted access).
T-BAS v2.1

(updated Jan 2017)

Upload your own tree and files for groups not covered by the reference tree (restricted access).